Overview
This section helps new users figure out where to start, which workflow to use first, and how to get to a meaningful first run quickly.
What this section covers
- The main workflows that matter to a first-time user
- The recommended order of operations from staged inputs to interpreted outputs
- The fastest route to a first successful run
- Common first-week questions about workflow boundaries and expectations
Who should start here
Use this section if you are trying to answer one of these questions:
- What is Glassbox Bio actually doing in my workflow
- What should I read before I touch Helm or input files
- How do I get to a meaningful first run without reading every page first
- Which section of the docs should I use for my current task
Recommended reading order
Important framing
The docs follow the order most teams encounter the product: prepare inputs, run analysis, review outputs, and operate the environment.