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Overview

Start here to understand the main workflows, recommended reading order, and first actions.

This section helps new users figure out where to start, which workflow to use first, and how to get to a meaningful first run quickly.

What this section covers​

  • The main workflows that matter to a first-time user
  • The recommended order of operations from staged inputs to interpreted outputs
  • The fastest route to a first successful run
  • Common first-week questions about workflow boundaries and expectations

Who should start here​

Use this section if you are trying to answer one of these questions:

  • What is Glassbox Bio actually doing in my workflow
  • What should I read before I touch Helm or input files
  • How do I get to a meaningful first run without reading every page first
  • Which section of the docs should I use for my current task
  1. Platform Overview
  2. End-to-End Workflow
  3. Choose Your Surface
  4. Quickstart
  5. FAQ

Important framing​

The docs follow the order most teams encounter the product: prepare inputs, run analysis, review outputs, and operate the environment.